Common Standard Operating Procedures
Benthic Surveys
- Analysis of benthic survey images via CoralNet : a summary of standard operating procedures and guidelines (2017)
- Collecting benthic photoquadrat imagery
- Analyzing benthic photoquadrat imagery via CoralNet - Development of a Semi-automated Coral Bleaching Classifier in CoralNet: A Summary of Standard Operating Procedures and Report of Results (2022)
- Rapid Ecological Assessment (REA) Benthic surveys SOP
Fish Surveys
- Long-term monitoring of coral reef fish assemblages in the Western central pacific (2017) - SOP, data processing, R code
- Coral reef ecosystem program standard operating procedures : data collection for rapid ecological assessment fish surveys (2015)
- Collecting fish data
- Collecting benthic cover estimate data
Oceanographic Surveys
- SOP for instrument data processing using the R package occ (2019)
- Water sampling SOP (last updated: 06/2023)
- Estimating coral reef carbonate budgets using Structure-from-Motion photogrammetry
- Carbonate Budgets
- Methods Comparion
- SOPs